miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|7206082|gb|AW560656.1|AW560656 CAACGCATTAACATATTAAAGAAGTGAAATGGCGTCTAATATTTATGTATAATAAAAACTAGCAAAGTGCAAGAATACAA
CAAAGTACAAACCACTAAATATCCGGAGGGGACTAAAATTGCTTTAATCAGTCAGCCTAAACAAAGTACAAACAGCTTAA
TAAATAAGAAAAAATTAAATAAAACTGAACCTAAAATGCACCTACAGAGTCCATACATAGTCTGGTGCATCCTCCCTTTT
CCCAGCCACTGTACGATACAAATACATCTTCTCGACTCTCTGCCCATCTTCCACGTAACAATCTGCCTGTTCACTTTCAC
TGAAAATCTCCACATTCAACCTCGGCATCTTCTTTGCCAGTGTCTTGCATGCTTCTACAGTCACCTCGCACGACGACATC
CAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTGTCTAATCTCAAG
CTTGCGAATCTTTTTGCATCCGTTCAATACATAGAGCATTCCCTTGTCACTCTCGCCAGCAAATGCAATAGATAACATTT
CAAGCTGCTCAGCATACATACCAATGT




Most similar to sp|Q9LW29|AFB2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis
           thaliana GN=AFB2 PE=1 SV=1
          Length = 575

 Score =  179 bits (454), Expect = 1e-44
 Identities = 89/130 (68%), Positives = 104/130 (80%), Gaps = 3/130 (2%)
 Frame = -3

Query: 585 IGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKIRKLEIRHCPFGDTALLTDIGKYETMRS 406
           IGMYA QLEMLSIAFAG++DKGMLYVLNGCKK++KLEIR  PFGDTALL D+ KYETMRS
Sbjct: 446 IGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRS 505

Query: 405 LWMSSCEVTVEACKTLAKKMPRLNVEIFSESE---QADCYVEDGQRVEKMYLYRTVAGKR 235
           LWMSSCEVT+  CK LA+K P LNVEI +E++     +   E  Q+V+K+YLYRTV G R
Sbjct: 506 LWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNRMEENGHEGRQKVDKLYLYRTVVGTR 565

Query: 234 EDAPDYVWTL 205
            DAP +VW L
Sbjct: 566 MDAPPFVWIL 575